rs33040505 SNP Detail

Summary

• ID
  rs33040505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57881017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT GCATGTAAGC TTGAATAATT
  W
  ATTTACTTGA AATCACTATT TGATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45729635	mCV24207289	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss148495465	ENSMUSSNP5688176	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss321551267	CHEV_5_58114914	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33040505					SNP	T	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57881017 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	718 bp upstream
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	216 bp distal
Rr125228	regulatory region 125228	within coordinates
Rr125229	regulatory region 125229	1183 bp proximal
Tssr46294	transcription start site region 46294	1800 bp downstream
Tssr46295	transcription start site region 46295	1666 bp downstream