rs33041290 SNP Detail

Summary

• ID
  rs33041290
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:29781794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCATATAT ATGTGCAGGG
  AGGAGACTTG TTCAGAATGC CTAAGAGACC TAGTTTGTCA TGCTTATACT AAAGCAGTGT
  TCTTCAGTCA CCATTGCCAA GTAGGACGGT AGTACAACAA AGTTACTAAA AGGACTAACA
  GCACCAAACA GTGCTGAGTG TGTAAATCAG TGGAAACTGC ATTATGGATC TAAGACAGAG
  D
  ATTAGAGGTA CATGAGTTTT TAAATAATCT ATTTGTAAAC TGTGCCACTA TATGGCTTCT
  GTGATGGTTT GTATATTCTT GGATCAGGGA GTGTCACCAT TTGGAGGTGT GGCCTTGTTG
  GAATAGGTGT GGCCTTGTTG GAATAGGTGT GACCTGGTTG GAGTGGATGT GTCACTGTGG
  GTGTGGGCAT AAGATCCTCA                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49435398	NES12621732	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	A		G
ss324907696	CHEV_15_29711403	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33041290					SNP	G	G	G	G	G	G	A	G	G	G	T	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435398	NES12621732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:29781794 () rs orientation: forward

Symbol	Name	Function Class
Rr390510	regulatory region 390510	within coordinates