rs33041584 SNP Detail

Summary

• ID
  rs33041584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154030772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACATCTCCA GACTGGTAAT GGCAAGAGTG CTCTTCAAGT
  GAGAAAACAG CTATGTAAGA GCAAAGGAAA ATGAACTGCT TGGCACAAGA GAGGACTATT
  Y
  GCATCCGTGT AGGTGGGGGG GAGAAACCTG GAAAATTCAA GGCTGGAAAA AGATGGGCTT
  TAGCCATGGA GGGTTTGAAT ACTAATTTAG CAACCAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45229985	mCV23867897	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148023829	ENSMUSSNP1919256	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320569675	CHEV_2_154014588	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33041584					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154030772 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1966 bp upstream
Rr567773	regulatory region 567773	1055 bp distal
Rr567774	regulatory region 567774	1476 bp proximal
Rr567775	regulatory region 567775	1977 bp proximal
Tssr20971	transcription start site region 20971	1897 bp upstream
Tssr20972	transcription start site region 20972	1911 bp upstream
Tssr20973	transcription start site region 20973	1924 bp upstream
Tssr20974	transcription start site region 20974	1954 bp upstream
Tssr20975	transcription start site region 20975	1981 bp upstream