rs33041598 SNP Detail

Summary

• ID
  rs33041598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121125511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CCCTTACATT TATGGCCCCT
  Y
  AGCCTCTTTG TCTTCGGCTC TTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45229269	mCV23082201	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147383123	ENSMUSSNP1519067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320482560	CHEV_2_121120766	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33041598					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121125511 () rs orientation: forward

Symbol	Name	Function Class
Gm14978	predicted gene 14978	within coordinates
Map1a	microtubule-associated protein 1 A	Intron
Rr373768	regulatory region 373768	within coordinates
Rr563799	regulatory region 563799	within coordinates
Rr563800	regulatory region 563800	435 bp proximal
Rr563801	regulatory region 563801	968 bp proximal
Tssr19740	transcription start site region 19740	407 bp upstream