rs33041624 SNP Detail

Summary

• ID
  rs33041624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34613773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGAGC GGATGCAGAG
  CCCGGGTTTG GGAGACGGGC GCGTTCGTGC CTCGGGTGGG AAACCACACT GGTTTGCCGT
  GCCGGGCATT CCTCCCGATC GCAGCCCTCA ATGTCTCTGG GTGCAAACTC GCGCAGACCG
  CGTCGGTGGC CGGGTTGCCC CGTTCTGGTC CAGGGGCGGA GCGCCACCGC CGGAGGAGCC
  S
  GGCTGGGTCG TCCCCACGCC GCCCCGCCCC ATCCCTACGG CCCCGGCCCC GCGGCCCAGG
  CCCACCTTTG ATGCCCGCCA TGGCGGTGAC GTCGCTCCTG GCTCCACGAC CCGGGCGGTG
  GCCGGGAGAC CCGAGACGCG CGGCGGCGGC GGCGGCCAGA CAACACCCGG AAGTGCACCC
  CGCTGCACTT CCGCCGGCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46227497	mCV22853987	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss322575459	CHEV_8_35209673	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33041624					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34613773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	within coordinates
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	1255 bp distal
Rr661963	regulatory region 661963	within coordinates
Rr661964	regulatory region 661964	404 bp proximal
Tssr76861	transcription start site region 76861	1370 bp downstream
Tssr76862	transcription start site region 76862	282 bp downstream
Tssr76863	transcription start site region 76863	252 bp downstream
Tssr76864	transcription start site region 76864	235 bp downstream
Tssr80896	transcription start site region 80896	458 bp upstream
Tssr80897	transcription start site region 80897	32 bp upstream
Tssr80898	transcription start site region 80898	98 bp downstream
Tssr80899	transcription start site region 80899	113 bp downstream
Tssr80900	transcription start site region 80900	134 bp downstream
Tssr80901	transcription start site region 80901	155 bp downstream
Tssr80902	transcription start site region 80902	355 bp downstream
Tssr80903	transcription start site region 80903	399 bp downstream