rs33041739 SNP Detail

Summary

• ID
  rs33041739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69332509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT TGGAATGGTC ATTTGGCATG
  K
  CCTCTCCCAC TGAAAATCCA GGATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46227066	mCV24073100	ABI	CRAMUS_MOUSE	f	SNP		T	T					G	T
ss60627404	NES16288081	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T		G	T	T	G		T
ss145084016	ENSMUSSNP5955199	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss322692293	CHEV_8_71403756	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33041739					SNP	T	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627404	NES16288081	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69332509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	556 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	342 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	698 bp upstream
Rr664454	regulatory region 664454	1019 bp distal
Rr664455	regulatory region 664455	154 bp proximal
Rr664456	regulatory region 664456	645 bp proximal
Rr664457	regulatory region 664457	1745 bp proximal
Tssr77601	transcription start site region 77601	691 bp upstream
Tssr77602	transcription start site region 77602	774 bp upstream
Tssr77603	transcription start site region 77603	793 bp upstream
Tssr77604	transcription start site region 77604	857 bp upstream
Tssr77605	transcription start site region 77605	866 bp upstream