rs33042054 SNP Detail

Summary

• ID
  rs33042054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:29780100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGCAT CCAATCCAAA
  TGGATGACTT TAGGTTCTCT CTTTCTCCCT GTTGTGTCTG ATTCCACAGA TGCTGAGTGT
  GAAGTCTTAG GTTTGTTAGC TGGTTCATGT CTAGAAACAG ACAGGTTCTC TCATACAAGT
  TAAAGTTAGA CTTCAGTGCC AAAACTCAAG TCCGATTTTG TCTTTGTTCA AACTAACAGA
  Y
  ACTAAAATGG AGAAGAAAGA ACCCCTTGAA GACCTTTGAA ATTCCCAGCC ATCAGTGAGA
  GACCAGGCTT CTGAATCTTA AGTGCTCCTC AGCATTGTGA TGGTCTTTCT ATGTGCCTGC
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCTTACT GACTTGTAAG
  GAAATACTTT CTTTACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49435402	NES12621777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33042054					SNP	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435402	NES12621777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:29780100 () rs orientation: forward

Symbol	Name	Function Class
Rr390510	regulatory region 390510	1652 bp upstream