rs33042058 SNP Detail

Summary

• ID
  rs33042058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:29779966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAATGA ACCAAGAAAA
  TGTAGTGATT GAAGTGTGGA ATTGTCATCC CTTTCATTTG TAAGAAATGC TTAAGTCCAG
  GCATACAGTT GAAGATGCCC AAAGATTAGG TTGCCACATT AACCAATCAC AATCCCAGAG
  GCATCCAATC CAAATGGATG ACTTTAGGTT CTCTCTTTCT CCCTGTTGTG TCTGATTCCA
  M
  AGATGCTGAG TGTGAAGTCT TAGGTTTGTT AGCTGGTTCA TGTCTAGAAA CAGACAGGTT
  CTCTCATACA AGTTAAAGTT AGACTTCAGT GCCAAAACTC AAGTCCGATT TTGTCTTTGT
  TCAAACTAAC AGATACTAAA ATGGAGAAGA AAGAACCCCT TGAAGACCTT TGAAATTCCC
  AGCCATCAGT GAGAGACCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49435406	NES12621775	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33042058					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435406	NES12621775	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:29779966 () rs orientation: forward

Symbol	Name	Function Class
Rr390510	regulatory region 390510	1786 bp upstream