rs33042224 SNP Detail

Summary

• ID
  rs33042224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93120141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGTTCATTA TTATCACGGT GCGGAAACAA AGCATGCAGG CAGACCTGGA GAAGGAGCTG
  AGAGCTCTAT ATCTTGATCT GCAGGCAGCA GGAGACTGCT ATGCTGGGGC TAGCTTGAGC
  ACACGAAGCC TCAAAGACCA CCTCCACACT GATCCACTTC CTCCAACAAG GCCAAACCTC
  CTAAAAGTGC CACTCCCTAA GGGCCAAGCA TTCAATCACA TGAGTCTGTG GGGGCCATTC
  TTATTCAAAC CACCAGACAT ATCCTTAGAC CTTGGACTCT CTACTACTAC TACTACTACT
  W
  CTTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCCTC TCTCTCTCCT
  TCTCTCTCTC TCTCTCCCTT CTCCTCTGTC TGTCCGTCCA TCTGTCTGTC TGCTTTCCTA
  TTCTCAGAGT AAGGTGGCAT GTGCAGGTTA CACACACACT CATGGACACT TATAGCCGCA
  CTGCTCTTTG TGGGCCCTTA TATAGTTCAG CCACAAAGTT CCTGCTTTAG TGACCAACCA
  AGGGCACCAA GCCCATGACA TCTGGAGTTC CACACTCAGG GCCAGGGTGG AGACACATGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45229725	mCV23856407	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	A
ss146941193	ENSMUSSNP5127354	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33042224					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93120141 () rs orientation: forward

Symbol	Name	Function Class
Rr561146	regulatory region 561146	1717 bp distal
Rr561147	regulatory region 561147	647 bp proximal
Tspan18	tetraspanin 18	Intron