rs33043297 SNP Detail

Summary

• ID
  rs33043297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189856609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGAAGG ACTCATTCAG
  GGCCATTTTA CTCCAAGATT GTCATTCTCC AAATAAGCCT TTCGGAATTT CTATTTGTCA
  AGTCCTTGCT CCCATAGCAA TTAATGTATG AGACCTGTCT GTCTGTCTTT CTGTCTGTCT
  TCTTTTGTCT TCTCCTGATT AAATAGTGTG ACCTTTTGAC TGTGAGAAGA ATACTTGGCA
  Y
  TCTTCAGAAG CAACTTACAG TAAAGCATGG CCTCTCAGTG CTCATATCAG CGTGATGGAT
  TCATAAAATA ACTGCACATT AATAATTTTC CCAGTACACA TTAGTGAGGT TTTATTTTTA
  CATCAAGTTC CGATGTAGGA GGACATGAAT GCATGGCAGT GTATGTGTAG ACACTTCTAT
  CCTCACAGAT ATAACATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765125	NES10646915	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33043297					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765125	NES10646915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189856609 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	944 bp upstream
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	722 bp distal
Rr425914	regulatory region 425914	630 bp proximal
Rr425915	regulatory region 425915	955 bp proximal