rs33043302 SNP Detail

Summary

• ID
  rs33043302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189857293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGGAA AAAAGGGAAA
  GGGAAGAAAA GGGCCCAACA CCAAGTCTAG AACAGGCACA ATGGCCCACA TCTTCAATCT
  GAGCACTTGG ATCTGAGTTC CAGGCTAGTC AGAGCTATAC TGAGACCCTG CGTCTCAGAA
  GTAAAGAGGA GGTTATTGAG CAATCGCTCC CCGAAGCGTT TATGTTGGCC TGTCCAGACA
  R
  AGCTCAGAGC TGACAGGAAG TGTAGCAAGG GCCCCTTCAC CCTTACTGGA CAAACACCAG
  TCTACTGAGA AGCCACAGAG ATTCCATGGA AGCACCTGCA GACATGCGGA TTTCCTGGAG
  GGAGCATCCT GTCCCCACCC AATGACAAGT CATACCAAAC GGGCCTTGCT GAGAGAGGCC
  ATGTGGCTGG CTGTAGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765131	NES10646920	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33043302					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765131	NES10646920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189857293 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	260 bp upstream
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	1406 bp distal
Rr425914	regulatory region 425914	within coordinates
Rr425915	regulatory region 425915	271 bp proximal