rs33043392 SNP Detail

Summary

• ID
  rs33043392
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189838901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAATGTG TCAGGTTGCT
  CCCAAGAGAA AGAGGAGCCC TGGTCAACAG ACAATACTGT TGTCTTGTGC TCTCAAACCC
  CAAATCTACT TCCTGGACCC AGGTCAGCAC ACTTTCCAGA CGCTTCCAGT TTTGCTTAGT
  GAGTTAAGAT CATATGAACA GGGCTGAGGA AACTGTAGGC AGACAGAATT AGCAAAAATT
  M
  TTTCCCACAA TACAGCCCTC CATTCTTCTA ACATACCTCA AGTGCATGCC CTCGGCCAGC
  ACAGATCTGC TGAGAGGAAG ATTAACAATG ATGACAAGAA TAGCCCCTGA CTTGATAAAA
  CAAATATCAA GTGGGTCAGG GGACAGGAAT TGCCTGTAAA TGACCTTGGG TTCAGTGTGT
  TCTTCATTAG CAGGGATTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46765032	NES10647596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33043392					SNP	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765032	NES10647596	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189838901 () rs orientation: forward

Symbol	Name	Function Class
Rr425910	regulatory region 425910	within coordinates
Rr425911	regulatory region 425911	960 bp proximal