rs33045689 SNP Detail

Summary

• ID
  rs33045689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144557412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAGGAAG CTGCAAGGGA GGCTGCTTGG AGGACCCTGG
  GTAGGTCATT AGAACTCTGC TTTGAACCTA CTTGACTGTG GTCAAGTCTC TTCCTATTGT
  Y
  TTGGTCTGAG GTGTTAGGGG TGTGTCTCAT CTACATGTGT AAGGGCTTGG GGAGTTGCCC
  TTATGTGACT GATAGCCACA AGTCTATGGG GGCAGGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45229778	mCV25227954	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147805169	ENSMUSSNP2573505	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs33045689					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144557412 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr46878	regulatory region 46878	389 bp proximal
Rr374001	regulatory region 374001	within coordinates
Tssr20549	transcription start site region 20549	698 bp downstream
Tssr20550	transcription start site region 20550	633 bp downstream
Tssr26613	transcription start site region 26613	930 bp upstream