rs33045941 SNP Detail

Summary

• ID
  rs33045941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189859116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGGTTAT TGGGAATAGG GTCCTCTTTG TGCAAGATGA
  AGCAGCTTGC TAACTTTCTG CTTGCTCTGG GCAGTGCACA CTCAGAGGAC CGTGTCGGGT
  R
  AAAGGCTTCT TGGAGCTCCT CCGATACTGG AGCAGCTCCT GTTTTGATGG TGGCTCCAGA
  GGTCAGTGTG GGGTAACAAT GGCTATTCTG AGAGAATGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765164	NES10646773	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33045941					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765164	NES10646773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189859116 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	114 bp downstream
Prox1	prospero homeobox 1	Intron
Rr425914	regulatory region 425914	1553 bp distal
Rr425915	regulatory region 425915	1252 bp distal
Rr425916	regulatory region 425916	358 bp proximal