rs33046625 SNP Detail

Summary

• ID
  rs33046625
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83079058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATGGCAT GGATGTACAA GGAAACAGCT TGTTGGGGTC
  ACTAATTACT CTTGACTTAT TTTCTTATTT TTAAAGAGAA ATGCCTCTGT TGTTGGGTTT
  M
  CTTTTGAACA GCAAGTGTCT TGGATGGTTT TATGTCACCT TGACATAAGC TAGGATTATC
  AGAGAGGAGG GAACCTCAGC TAAGCAAATA CCTCCATAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46227742	mCV24054909	ABI	CRAMUS_MOUSE	f	SNP	A	A				C
ss51971199	NES14983448	PERLEGEN	MM_PANEL2	f	SNP			A	A	A		C	C	A		C	A	C
ss145303230	ENSMUSSNP3062886	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322735738	CHEV_8_84876328	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33046625					SNP	A	A	A	A	A	C	C	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971199	NES14983448	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83079058 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Rr382378	regulatory region 382378	1489 bp downstream
Rr400995	regulatory region 400995	877 bp downstream
Rr666114	regulatory region 666114	777 bp distal
Rr666115	regulatory region 666115	984 bp distal
Tssr81943	transcription start site region 81943	979 bp downstream
Tssr81944	transcription start site region 81944	1023 bp downstream
Tssr81945	transcription start site region 81945	1066 bp downstream
Tssr81946	transcription start site region 81946	1121 bp downstream
Tssr81947	transcription start site region 81947	1904 bp downstream