rs33046680 SNP Detail

Summary

• ID
  rs33046680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69420898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG TCTCCCCTTC ATCATCAGGT
  Y
  CCCAGAACTT GACACATAGC ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45230896	mCV23266161	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C	C
ss146729526	ENSMUSSNP5699923	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss320331748	CHEV_2_69428611	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33046680					SNP	C	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69420898 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	208 bp upstream
Rr558431	regulatory region 558431	81 bp proximal
Rr558432	regulatory region 558432	1519 bp proximal