rs33047424 SNP Detail

Summary

• ID
  rs33047424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86234718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCCACCC CCACCCCCAC AAGGCACAGT GATCCTTGAG
  CATAGTCCAA GCCAAGTCTC ACCTTTGGCA CCTCACCAAT ACTGACTCCC TGGCCAGAAA
  Y
  TGGCCGGATG GGCCCTAGAT GTAGACATTC TTCTATTACT GTGAAATTTT ATTTATGAAG
  AATTGGAAGG AGGCCTTGGG AGGTGTACCT CTTTCCTGTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49436587	NES12847842	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33047424					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436587	NES12847842	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86234718 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	1023 bp proximal
Tssr7739	transcription start site region 7739	194 bp downstream
Tssr7740	transcription start site region 7740	1559 bp upstream
Tssr12766	transcription start site region 12766	1398 bp downstream