rs33047427 SNP Detail

Summary

• ID
  rs33047427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86233958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGCCCA CAGGCCACGA
  GGGCTTCAAG ACCTTTGGCA TCTCTCGGGT CCGAAGCAGC CGGATGAACA AGGAACCGTG
  CTTCTACCGG GCCATGCTTG TGGTACACAA GTTGCTCCCT GCCGAGCTGC TGGCCATGTG
  GGATCTGGTG CATAGCAATC TTACCTGTTC TGTCAAGTTC CAGGTGCTCT AATGTTGCTG
  R
  GCCACCAGTG CGTTTGTCCT CGGGGGATAC ATGGCATTGT CTTTGGTCCC CTGCAGGAGG
  TGAAGGGTTT GGGCCCTCTG TGCCCCTAGG TGTGGTGAGG TACAGAGATC CAGAGAGGGA
  CTCCCAGAAA TTCCCAGAAA GAGGTCCAGG AATAGCCAGA ACTTCCCTGA CTGGAGGTCA
  TCCGAGAACC TGGATCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49436593	NES12847839	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33047427					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436593	NES12847839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86233958 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Rr366828	regulatory region 366828	within coordinates
Rr414519	regulatory region 414519	1862 bp distal
Rr414520	regulatory region 414520	1783 bp proximal
Tssr7739	transcription start site region 7739	541 bp upstream