rs33047430 SNP Detail

Summary

• ID
  rs33047430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86233038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGACCCC TGGTCAATTC
  CTTCAGGATC CTTTACCGCC CACGCCGGGG CCAGCCAAAA CTGGAAATCT GGTCAACCCC
  AACAGCTTCT GGAAGAGTTC AAAGGATGTA GCGGCTCCCA CTCCCACAGT TCCTCGGGGA
  CCCCAGGTCT GGGATGTGAT CACCACTAAC TGCTCTATCA ACATCAACCT GACCCATCAG
  Y
  CCTGGTTCCA GAGTCTGGAG CCACACTTCC GACAGTTTCT AGCCTATCGG CATTGCCGGT
  ATTTCCCCAT GTTGCTGAAC CACCCAGAGA AGTGTGCTGG CGATGTCTAT ATGCTGGTGG
  TTGTCAAGTC GGTCATCACA CAGCATGACC GCCGAGAGGT CATTCGTCAG ACCTGGGGCC
  ACGAATGGGA GTCAGCGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49436599	NES12847833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33047430					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436599	NES12847833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86233038 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Cpgi501	CpG island 501	1138 bp distal
Gm28626	predicted gene 28626	1256 bp upstream
Rr366828	regulatory region 366828	560 bp upstream
Rr414518	regulatory region 414518	1169 bp distal
Rr414519	regulatory region 414519	942 bp distal
Tssr7736	transcription start site region 7736	1870 bp downstream
Tssr7737	transcription start site region 7737	1834 bp downstream
Tssr7738	transcription start site region 7738	1813 bp downstream
Tssr7739	transcription start site region 7739	1461 bp upstream