rs33047432 SNP Detail

Summary

• ID
  rs33047432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86232014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC CCAGTCCTGG AAAGTCATGA
  R
  TCTCCCAGTG TGAGCTAAGG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49436601	NES12847831	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	G	A	A	A	G	A	G	G
ss144875328	ENSMUSSNP3665378	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33047432					SNP	A	A	A	A	A	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436601	NES12847831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86232014 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Cpgi501	CpG island 501	114 bp distal
Gm28626	predicted gene 28626	232 bp upstream
Rr366828	regulatory region 366828	1584 bp upstream
Rr414517	regulatory region 414517	1048 bp distal
Rr414518	regulatory region 414518	145 bp distal
Rr414519	regulatory region 414519	within coordinates
Tssr7735	transcription start site region 7735	1053 bp downstream
Tssr7736	transcription start site region 7736	846 bp downstream
Tssr7737	transcription start site region 7737	810 bp downstream
Tssr7738	transcription start site region 7738	789 bp downstream