rs33047438 SNP Detail

Summary

• ID
  rs33047438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189841341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT CACATTACCA GGGAATGTGA
  Y
  GTTCCTTACC ACAGGGAGGG AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46765086	NES10647483	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		T		C
ss320192299	CHEV_1_191933023	CHEVERUD	SCREENING_POP	f	SNP							C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs33047438					SNP	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765086	NES10647483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189841341 () rs orientation: forward

Symbol	Name	Function Class
Rr425910	regulatory region 425910	1704 bp distal
Rr425911	regulatory region 425911	1244 bp distal