rs33048626 SNP Detail

Summary

• ID
  rs33048626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86231653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGCGAG GCGCACGCTT
  GGCTCTGCGG CCACGACTCC GGCAGCCTGT ATGCAACGTC TCTCTAGCCT TGGGGTTTCA
  CTAGCAGACA CACACACACC CGACCCCTCC GGTCCCTCTT CCCTCCTGTG GCCTCTTCTC
  CGGACCGCCT CGACCCTTCT CCTTCCCCGG CTTTGCTCTT ACTAATGGAG TGGATTGGTA
  Y
  GTGCGAGCCA GGGCCCTGAG GCTGGTTCTT ACCCGGACTC CGGAGCTACG ACGTGGAGCT
  TCTTTAGAAC CCTGAGGACT GGAGTACTGG GTTCAGAATT CTCTTACTTC CATTCCCAGC
  AGCGCGCCTC CAGTCATTTC TGTCTTTCTC CATCCAACCT GGTAACCAGG AAGTCATGGG
  GCTCTTGAGG AAAGCTCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49436605	NES12847826	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33048626					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436605	NES12847826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86231653 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Cpgi501	CpG island 501	within coordinates
Gm28626	predicted gene 28626	within coordinates
Rr366828	regulatory region 366828	1945 bp upstream
Rr414517	regulatory region 414517	687 bp distal
Rr414518	regulatory region 414518	within coordinates
Rr414519	regulatory region 414519	217 bp proximal
Tssr7735	transcription start site region 7735	692 bp downstream
Tssr7736	transcription start site region 7736	485 bp downstream
Tssr7737	transcription start site region 7737	449 bp downstream
Tssr7738	transcription start site region 7738	428 bp downstream