rs33049269 SNP Detail

Summary

• ID
  rs33049269
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189855853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTTCTT CAAAGGAAAC
  TGAGCTAAGT CCACACTCTC AGAAGGGGGC TTTAGACGGC ACCTGCATTT TCTAAAAATG
  GCCGGCCTCT ATTCTCTTGT GTGGAGTTGT TAAATATAGC AGCATTGTGA TAGACGGCGG
  CTGCTCCGTG GGTTTCAGAG GAGACATGCG CAGAGGATAC ATGGGACCCG CCAACACCAG
  S
  GTTTCACTGT GGAACGCTGC AGTAGAAGAG AGACCCACGT CCTCACGTGG TTAAGCAGGT
  CCGTTCGAGA AGAAACTTGC CATCTCCCTT TTCAGAATTT GATTTCTTTC TCCTTTGGAC
  TCCCATTATG AAAAAATAAT GTATTTTCAG AATATAATAC ATGTTGGGCT TCTACATGAA
  CTAAATCCCT AACGTCAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765113	NES10647076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33049269					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765113	NES10647076	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189855853 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	1700 bp upstream
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	within coordinates
Rr425914	regulatory region 425914	1386 bp proximal
Rr425915	regulatory region 425915	1711 bp proximal