rs33049712 SNP Detail

Summary

• ID
  rs33049712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100818531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA ACATACATGA CTACTGGCAC
  R
  GCTTTCTCTA ATATTAATTA GAATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45730733	mCV24432546	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss321627390	CHEV_5_101099684	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33049712					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100818531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Gm15777	predicted gene 15777			194 bp upstream
Rr615537	regulatory region 615537			782 bp proximal
Rr615538	regulatory region 615538			923 bp proximal
Rr615539	regulatory region 615539			1789 bp proximal