rs33049887 SNP Detail

Summary

• ID
  rs33049887
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189836902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCTTTC TCATTTCTCC
  CTGTGTTCTC ACTGTGGTGG TACTGGAAAG CACCAAGGGT GGAAGACTAG AAGCCAGATT
  CAGAAAATAT AAATATGTCA TTTCTTTACA AGTTTGATGC ATTCGTTTTT CAGCGTCAAA
  CATCTATACA TTCTCTGTGT TGTATTGTTT ATCCTTGTTT TCCCTAGATG GAGCATGTGG
  M
  GCATTCCTGC ATTGGGTATA GGGTACCCAT CTTTAAACAT TGCCTTGGAC CATCTATACT
  TGTGATAGTT TGCGTGAGAA ATGTCTCCTA TAGCCTTGAA CTTTTGAACA CTTGGTCCCC
  TACTGATGGG GCTATTTGGG TAGGGTTTTG GGGGTGTGGT CTTGCTGGAG GAAATATGTT
  GTTGGTGCAG CCTTTGAGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46765008	NES10647788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33049887					SNP	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765008	NES10647788	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189836902 () rs orientation: forward

Symbol	Name	Function Class
Rr425910	regulatory region 425910	1901 bp proximal