rs33049893 SNP Detail

Summary

• ID
  rs33049893
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189837402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGGTGA TGAACTCTTA
  TTCTCCTGGA ACTGTAAGGC CACATGAACC ATTTCTTTGA TCAGTTGCCT TGGGGACAAT
  ATTTTGTCAC AGCCACAGAG AAGTAACTAA TACAATGTCA TACACAACCA TTTTGTCTGA
  GGTCAGGGAA CAAGTTGTTT GGAGGCACCT TTGAGAGCTG AGCATATTCA AGCAGAGGAT
  W
  CAGCGTGGTG GGGTCCAGCC ATTGTCATGG TGCTCCAGAG AGGATGTGGC TGAAATCCAC
  CAGAATTCAC CAAGGGATAT TGGAGGTATA ACTCCTAGTA GACCATACCA GCATGTCTGT
  GATTCCAAAG CAATATCTCC TCTCCTTTGT TTTTGTCTTT AAATTTATTT ATTTATTTAT
  TTATTTATTT ATTTATTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46765014	NES10647717	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	A	A		A	A		A
ss320192288	CHEV_1_191929084	CHEVERUD	SCREENING_POP	f	SNP								T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33049893					SNP	A	T	A	T	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765014	NES10647717	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189837402 () rs orientation: forward

Symbol	Name	Function Class
Rr425910	regulatory region 425910	1401 bp proximal