rs33051890 SNP Detail

Summary

• ID
  rs33051890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189886523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAGGG GTATCCTGGC
  AGGAGAGAGC AGGAGTGGGG TTGTCGCTTT TGTTAAAGCA ACGGTCCAAC ACCAAATACA
  ATTTGCCCGT CCTGGATTTA TAGTTAACTC CTTTGAGAAT GACATAAAAA GTTGGGGGCT
  AACAAATCAA TACATGTGGG TTAGTAGATC AATAAGTAGC CACTTACCCC AAATAAGAAG
  R
  GCTATTTATC TAGAAACATC ATCACCTTTT AGATCTGTAA ACAGTGGCAA CGAAAACAGT
  TCCCAGGAGA ACGGCAGGCT AACCATAACA ATCCAGGCTG CCCGAATCTC TCTCAGATTC
  TTGGCACTCC TCAGCAGGCT CCGAGCTGGG ATGGCTCTGG TCACATCTGT GCCGCAGCCT
  GGCCCTGCCA TTTCCTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765479	NES10645690	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33051890					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765479	NES10645690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189886523 () rs orientation: forward

Symbol	Name	Function Class
Prox1	prospero homeobox 1	Intron
Rr425922	regulatory region 425922	1517 bp proximal