rs33052079 SNP Detail

Summary

• ID
  rs33052079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67621893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT CCTTTATCTG TGGGTCAAGA
  Y
  CCTTTGGGAG TTCAATAACC TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45731249	mCV25116685	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148602237	ENSMUSSNP4746630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321565301	CHEV_5_67855789	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33052079					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67621893 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	within coordinates
Rr366834	regulatory region 366834	15 bp downstream
Rr612680	regulatory region 612680	632 bp distal
Tssr46586	transcription start site region 46586	613 bp downstream