rs33052980 SNP Detail

Summary

• ID
  rs33052980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151300206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGACTGGCA TGGAATTTTT CTATGTAAAC CTCAAATGGT GGTTAAAAGA AAATTGGGCA
  CTTAATGTAC AAGATTGTAT CTGCATCTTT GTCTCTGCCT GCATAAAAAT CAACTCCAAA
  TAGACTGAAG ACCTTAAAGA AGACACGAAA CTCTAAAATT GATATTAGAA AAGTAGGGGC
  AACAAACTAA GGCCGAGGCA TAAGTTAGCA TTTGTGAATT GAACTGCATT TTTCCAGGAA
  ATATGGCAAA CCATTGATAG TTGAGTTGTC ATAAGTGTCA CCATAGGAAA CGAGTGTGAA
  M
  ATTATCAAAG GACAAAATAA TTTTCCAGCA AATAAAATAG ACACCCTAGC ACAGTGCTGG
  CAGAGCAAAC ATCTACACAA CCATTATAAG ACCTAGTGTG GAGATTCCTC AAAATGTGAA
  AGCATGTCTC CTGTGAGGCT CTGCCAGTGC CTGGCAATTA CAGAAGTGGA TTCTCACAGT
  CATCCATTGG ACGGAACATA AGGTCCCCAA TGAAGGATCC AGAGACATAC CCAGGTATCT
  GAAGGGGACT GAAGCCCCAT AGAAGGAACA CCAATATGAA CTAACCAATA CCCTCAGAGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45231692	mCV23532088	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss147956899	ENSMUSSNP2273438	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33052980					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151300206 () rs orientation: forward

Symbol	Name	Function Class
Gm14150	predicted gene 14150	670 bp upstream
Rr55801	regulatory region 55801	594 bp proximal
Rr55802	regulatory region 55802	1394 bp proximal
Tssr691	transcription start site region 691	861 bp upstream
Tssr20717	transcription start site region 20717	569 bp upstream