rs33053357 SNP Detail

Summary

• ID
  rs33053357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40057145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAT TCCATCTTTC TTTTCCTCGG
  R
  GACACATTTC ATCAGACCTT GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46229088	mCV24622188	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss144619558	ENSMUSSNP1997392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		A
ss322624422	CHEV_8_40689458	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33053357					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40057145 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1363 bp downstream
Tssr80996	transcription start site region 80996	433 bp downstream
Tssr80997	transcription start site region 80997	482 bp downstream
Tssr80998	transcription start site region 80998	856 bp downstream
Tssr80999	transcription start site region 80999	920 bp downstream
Tssr81000	transcription start site region 81000	1115 bp downstream
Tssr81001	transcription start site region 81001	1171 bp downstream
Tssr81002	transcription start site region 81002	1185 bp downstream
Tssr81003	transcription start site region 81003	1207 bp downstream
Tssr81004	transcription start site region 81004	1267 bp downstream
Tssr81005	transcription start site region 81005	1288 bp downstream
Tssr81006	transcription start site region 81006	1325 bp downstream
Tssr81007	transcription start site region 81007	1390 bp downstream
Tssr81008	transcription start site region 81008	1500 bp downstream
Tssr81009	transcription start site region 81009	1516 bp downstream
Tssr81010	transcription start site region 81010	1543 bp downstream
Tssr81011	transcription start site region 81011	1621 bp downstream
Tssr81012	transcription start site region 81012	1646 bp downstream
Tssr81013	transcription start site region 81013	1814 bp downstream
Tssr81014	transcription start site region 81014	1841 bp downstream