rs33054092 SNP Detail

Summary

• ID
  rs33054092
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3766671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATCATT CCACAGCCCC
  GAGTGCAGCA TCATGATACA GTCCTCATGT CCTCTGGAAT CATTGGGCTC TCCAGAGTTC
  CAGTGGCTGT GGTAGTTCAG TGGGAGTGTT ACTGGGACTG AGGATAGACC TAGGGTCAAG
  CTTCCTTTCC CAGGCCTTGC TTGTTTGCTT GGCTCTGCTC TAGACATTCT GAATGCCTAC
  W
  TTGAGTTTAT ATCTGCAGTG TATATTTGTA CGGACCCAGA ATTTAACCCT TAGTTAATTC
  CCAGGGTCTA GCATATCCAT TCTTTAAATG TTATTTCAGG GGCTGAGGAT ATTTCTCAGT
  GGAAAAGAAT GCTTGTTATA ATGCTTTGTT GTACAAAGAC CTGAGTTCAA ATCCCAAGTA
  GTCACATAAA AAGCTCTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46228240	mCV22849358	ABI	CRAMUS_MOUSE	f	SNP		T	A						A
ss61076275	NES16052994	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	A	A	A	A	A	T	A
ss148548699	ENSMUSSNP1398517	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33054092					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076275	NES16052994	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3766671 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	1954 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	1898 bp upstream
Rr658970	regulatory region 658970	1928 bp proximal
Tssr80223	transcription start site region 80223	876 bp downstream
Tssr80224	transcription start site region 80224	891 bp downstream