rs33054142 SNP Detail

Summary

• ID
  rs33054142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124716008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGACCTG AATAAAGAAA
  GAAGAAACTC CCAATAGCTG TCCTCATGTG CACCCACACT CATGCACACA CTAATAAACC
  AGAAAGTAAA TGTCAAAGAG GCCAGCAGGG ATCTGCAGCA AGCGACAACA TGGCAGGTCA
  TTACTTAGCA GGGCAGATGA GATCTGTGAG ACAGATCTGC AGGCTCCAAG GTATCTGAAT
  R
  TATGTATGCC GGGAAAATAT GCGAGGCTGT GTTAGAGAAA TTCTCCTCTT GGCCATCCCA
  TGAGAACGAA AAAGGCCCAT ATTTTGTAAG TATAAGAGGC CATGTTATGC CCAGGATCTT
  AAGACTTATC ATACTCAGTA GGTCTCAATG AATATTGATA CCAGAATTTA TTCCGGAACA
  TTACAGCACT GCACAGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45732005	mCV24880000	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss51196606	NES13821402	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G		G	G	G	G		G	G	G	G		G
ss149203464	ENSMUSSNP5156191	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321672957	CHEV_5_125027954	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33054142					SNP	A	A	A	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196606	NES13821402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124716008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	739 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1203 bp upstream
Rr399368	regulatory region 399368	1031 bp upstream
Rr620506	regulatory region 620506	708 bp proximal
Rr620507	regulatory region 620507	1176 bp proximal
Rr620508	regulatory region 620508	1206 bp proximal
Tssr48907	transcription start site region 48907	1170 bp upstream
Tssr48908	transcription start site region 48908	1189 bp upstream
Tssr53375	transcription start site region 53375	1078 bp downstream
Tssr53376	transcription start site region 53376	1100 bp downstream
Tssr53377	transcription start site region 53377	1138 bp downstream