rs33054939 SNP Detail

Summary

• ID
  rs33054939
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:75698332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC ATTTTTGTAG AAAAAAAAAA
  H
  TTGAGTGTGG AAGAAGAAGT TGTCC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39488771	mCV23506434	ABI	CRAMUS_MOUSE	f	SNP		T	A		T	C
ss62907422	NES17398042	PERLEGEN	MM_PANEL2	f	SNP	A			T			T	T		T	T	A
ss325451894	CHEV_17_75790677	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33054939					SNP	A	T	A	T	T	C	T	T	T	T	T	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62907422	NES17398042	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75698332 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	mRNA-UTR
Rr392951	regulatory region 392951	1992 bp upstream
Rr531033	regulatory region 531033	210 bp proximal
Tssr145877	transcription start site region 145877	373 bp downstream