rs33057524 SNP Detail

Summary

• ID
  rs33057524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTCTTCTGTC CAGTCCGAAG GACCCTTTTA CTACAGCACA GGTACATGCC
  W
  ATTGGGGCAC TCCTGCCGCG TGGAACCGGG AAGACCCACG TCTCCTGAAC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45231741	mCV25127079	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss148084911	ENSMUSSNP4319061	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320582504	CHEV_2_156698887	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33057524					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			mRNA-UTR
				Noncoding-Transcript-Variant
Rr568378	regulatory region 568378			419 bp proximal
Rr568379	regulatory region 568379			672 bp proximal
Sla2	Src-like-adaptor 2			mRNA-UTR
Tssr21217	transcription start site region 21217			637 bp downstream