rs33058624 SNP Detail

Summary

• ID
  rs33058624
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTGCCCA AAAAATGTGG GTTTATCAAG AGTAGATGTA
  TTACTGTGCT AAATATTGAT TTACCTTGAG AAAAATTAGT GGAGCTATGG TATAAGTACG
  W
  AAACATTATT TCGTATTAAT CATCTTAAGT TCCCTGAAAT GAGTTAAGCT TGACAGCTAA
  GCTAGAGGGC CGAGACATTT ACATATCCTG TGAGTTTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45231917	mCV22628413	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss147514321	ENSMUSSNP1444621	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33058624					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1117 bp proximal
Gm75308	predicted gene, 75308			1043 bp upstream
Rr564422	regulatory region 564422			679 bp proximal
Rr564423	regulatory region 564423			1405 bp proximal
Rr564424	regulatory region 564424			1438 bp proximal
Rr564425	regulatory region 564425			1575 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			251 bp downstream
Tssr26085	transcription start site region 26085			1343 bp downstream
Tssr26086	transcription start site region 26086			1472 bp downstream
Tssr26087	transcription start site region 26087			1503 bp downstream
Tssr26088	transcription start site region 26088			1565 bp downstream
Tssr26089	transcription start site region 26089			1579 bp downstream