rs33059452 SNP Detail

Summary

• ID
  rs33059452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACCATC TGTAGCCAAT
  GACTTTGAAC CCATAACCTC TCTCCAGATG CAAGCTCCCC GGTATGGATC ATTGCAGGCT
  TGAGAGCAAT GAGGTTAACT TCTGTGACTT TTCTCAGGGA TGCTTGGAAT TAAACCTTGC
  TGTGCAAGTT GGACAGCCAA GTCAGGTCCC CTGGTCGCAT GCCACTTGGC TTTCCCATTT
  Y
  AAAGAAAGTT CAATATGTAG AGATAGGGAT ATCTAGATAG ATATAAACAC TTATTGTCAA
  CATTCTCACC TTGTTTTTAA GTTGTCATTT AGTCAGTCAC TTTATTCCCA ATTATAAATT
  TCTCCCAAAC AAAGGAAAAT AAACAATTGT TTTACTAGTT TAGTGTAAAG GAAAAAGGAC
  TAGTGGGAAG TGGGGCAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45231843	mCV23728584	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147112303	ENSMUSSNP6549349	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320437745	CHEV_2_102292655	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33059452					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	218 bp distal
Fjx1	four jointed box 1	mRNA-UTR
Rr561694	regulatory region 561694	1738 bp distal
Rr561695	regulatory region 561695	1154 bp distal
Rr561696	regulatory region 561696	within coordinates
Rr561697	regulatory region 561697	945 bp proximal
Rr561698	regulatory region 561698	1072 bp proximal
Tssr25397	transcription start site region 25397	724 bp upstream
Tssr25398	transcription start site region 25398	683 bp upstream
Tssr25399	transcription start site region 25399	655 bp upstream