rs33059658 SNP Detail

Summary

• ID
  rs33059658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192102313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATGTGT AACATGACAG
  TATTTGAGAG CTTGACCATC AGTGGCCCTG GGGAAACTTC TGAGGCAGCC ACAGGATAGG
  TCTCCAATAC ACACACATCT CTCTAAGGGG ACAAGACATC ATGGCATAAT CACTATTTAC
  AGACATTTGA TTTTTGCCCA ATATCCTGCA GATGCATCCT CATTGAACCA TGCAAACTGG
  Y
  TTTATTGCTC TCAGTCTCTA AGTGAGACAG TTGAAGTTCA GAGAGTCAAG TGTTTGAGGC
  CCACGGGGTC CCATCCCAGC AACCTCAAGA CCTTCTGCTC CCACCAGACT TGTGAAGTCC
  TATTTCAGTA TCCCTCTGTG TTCAGCCTCT CTATTCCTGC CCAGCTTTAA AATTGAAATA
  CTGATGATTA ATGAGATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46767126	NES10657011	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33059658					SNP	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767126	NES10657011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192102313 () rs orientation: forward

Symbol	Name	Function Class
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510	1889 bp distal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1	within coordinates