rs33060192 SNP Detail

Summary

• ID
  rs33060192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87053957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggagggaga ggaggagaag gagggggagg
  gagggggagg aaggggggaa aggggGGAAG GGGTGGTCCC AGGCAACCTT GTAGACTGAA
  CTCCCTGGAT CTTCTGGGGT CTTTGAGGGC CGGGTAGTTC AGTTCCCACA TACCTGGTGA
  R
  GAGCTAGGGA CTGGCAGGAA AAGGAGGCAG AAGACAACCT AAAGTTCACC TTCCTTCATC
  CTCTCTGACC ACAGGTGATC CTTGGTGGGG GCCGAAAATA CATGTTTCCT GCTGGAACCC
  CAGACCCCGA GTATCCAAAT GATGCTAATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss49438559	NES12831892	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		G		A
ss319829035	CHEV_1_89022810	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs33060192					SNP	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438559	NES12831892	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87053957 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	875 bp proximal
Rr17963	regulatory region 17963	644 bp proximal
Tssr145	transcription start site region 145	109 bp upstream
Tssr146	transcription start site region 146	1353 bp upstream
Tssr147	transcription start site region 147	1705 bp downstream
Tssr7781	transcription start site region 7781	1275 bp downstream
Tssr7782	transcription start site region 7782	832 bp downstream
Tssr7783	transcription start site region 7783	539 bp downstream
Tssr7784	transcription start site region 7784	297 bp downstream
Tssr7785	transcription start site region 7785	258 bp downstream
Tssr7786	transcription start site region 7786	231 bp downstream
Tssr7787	transcription start site region 7787	88 bp upstream
Tssr7788	transcription start site region 7788	490 bp upstream
Tssr7789	transcription start site region 7789	520 bp upstream
Tssr7790	transcription start site region 7790	574 bp upstream
Tssr7791	transcription start site region 7791	698 bp upstream
Tssr7792	transcription start site region 7792	726 bp upstream
Tssr7793	transcription start site region 7793	739 bp upstream
Tssr7794	transcription start site region 7794	756 bp upstream
Tssr7795	transcription start site region 7795	782 bp upstream
Tssr7796	transcription start site region 7796	805 bp upstream
Tssr7797	transcription start site region 7797	822 bp upstream
Tssr7798	transcription start site region 7798	859 bp upstream
Tssr7799	transcription start site region 7799	1095 bp upstream
Tssr7800	transcription start site region 7800	1114 bp upstream
Tssr7801	transcription start site region 7801	1173 bp upstream
Tssr7802	transcription start site region 7802	1300 bp upstream
Tssr7803	transcription start site region 7803	1361 bp upstream
Tssr7804	transcription start site region 7804	1385 bp upstream
Tssr7805	transcription start site region 7805	1459 bp upstream
Tssr7806	transcription start site region 7806	1473 bp upstream
Tssr7807	transcription start site region 7807	1493 bp upstream
Tssr7808	transcription start site region 7808	1598 bp upstream
Tssr7809	transcription start site region 7809	1668 bp upstream
Tssr7810	transcription start site region 7810	1693 bp upstream
Tssr7811	transcription start site region 7811	1722 bp upstream
Tssr7812	transcription start site region 7812	1772 bp upstream
Tssr7813	transcription start site region 7813	1813 bp upstream
Tssr7814	transcription start site region 7814	1843 bp upstream
Tssr7815	transcription start site region 7815	1911 bp upstream
Tssr7816	transcription start site region 7816	1951 bp upstream
Tssr7817	transcription start site region 7817	1963 bp upstream
Tssr12838	transcription start site region 12838	505 bp upstream
Tssr12839	transcription start site region 12839	495 bp upstream
Tssr12840	transcription start site region 12840	486 bp upstream
Tssr12841	transcription start site region 12841	563 bp downstream
Tssr12842	transcription start site region 12842	889 bp downstream
Tssr12843	transcription start site region 12843	1151 bp downstream
Tssr12844	transcription start site region 12844	1342 bp downstream
Tssr12845	transcription start site region 12845	1513 bp downstream
Tssr12846	transcription start site region 12846	1574 bp downstream