rs33060819 SNP Detail

Summary

• ID
  rs33060819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115081011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA CCTGTTTGTC CCAGTAGACG
  W
  CACCATATTG TTACATCTCG TTACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45732082	mCV25153003	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss149119435	ENSMUSSNP2355682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321653901	CHEV_5_115392961	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33060819					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115081011 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	Intron
Cpgi16342	CpG island 16342	262 bp distal
Rr399277	regulatory region 399277	603 bp downstream
Rr618069	regulatory region 618069	1590 bp distal
Rr618070	regulatory region 618070	784 bp distal
Rr618071	regulatory region 618071	749 bp distal
Tssr48192	transcription start site region 48192	740 bp downstream
Tssr48193	transcription start site region 48193	729 bp downstream