rs33061447 SNP Detail

Summary

• ID
  rs33061447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAGTA CAGCTGGACT
  CAGGGGAGGG GGCAGGTGTG CCCAGGTGAG CTAACAAAGC TGAGCTTCCC ACAGGAAGTG
  CCAGGCCAGG GAGGGAGGGC TGAAAATGGG CATTAGGAGT ACTGAGAAGT CCTCTGTGAG
  AGTGGGGAGT TCTGTCCACA AGATCCATAA TGTGGTCTGG GCTGTGTCTC CGTGTGAGTG
  Y
  GCATCAGCCG TGGGTATTTA TTGATATGCT ATTTTTGTGC TGGAAGCCTG TGCAGGGCGG
  GTATCACATC ATTTCTCTCC CAAGTTCTCG GTCTCTGAGA GAACAGCAAC TTGCCAGAGA
  CTTGTTGGAT AGGGCAAAGT GCCAATCTAA GATTGCCCCA TGCTGTGGCC CTGGTTCTGA
  CTCATTCTAT CTTGAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766947	NES10733047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33061447					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766947	NES10733047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390112 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	1139 bp proximal
Gm65215	predicted gene, 65215	535 bp downstream
Gm65218	predicted gene, 65218	1625 bp downstream
Rr580638	regulatory region 580638	6 bp proximal
Rr580639	regulatory region 580639	503 bp proximal
Rr580640	regulatory region 580640	1404 bp proximal
Tssr30454	transcription start site region 30454	1519 bp upstream
Tssr30455	transcription start site region 30455	1533 bp upstream
Tssr30456	transcription start site region 30456	1564 bp upstream
Tssr34391	transcription start site region 34391	1410 bp downstream