rs33061449 SNP Detail

Summary

• ID
  rs33061449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCGCACA CACACACACA
  CACACACACA CACTTTAGGA GATTGAATTT CAGATAGGAT AATCCCAGAT TGGTAGAAGG
  TAAAGCTGGG GGCAGATTGG CAGGAGGATT TATGTGCCGG TGACCTCCCA CCCCCCACCA
  GCTGCTCTCA GATGCAGAGA TTTGGGGGGA AGGAAGGCTG AGCAGGAACA TCATTGGAGA
  Y
  GAGTCTCAGG TTTGATCCAA GGCTGTGAAC ACCTGGCTGG CAGAGTCCAG CCAGGAGCTG
  TATTTATTTC TCCATGTTAG CGGATGTCAC TCAAGGTCTC CAAATTTGAG AGCACCAAAG
  TTGAGTAGCA TCTGGCTGCA GACTTCCTGG TCTATCCTCT TGTTTAACGG AAGAGGAAGT
  TGGAGCCTGG AGGGACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766950	NES10733050	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33061449					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766950	NES10733050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390638 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	613 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1743 bp proximal
Gm65215	predicted gene, 65215	9 bp downstream
Gm65218	predicted gene, 65218	1099 bp downstream
Rr580638	regulatory region 580638	216 bp distal
Rr580639	regulatory region 580639	within coordinates
Rr580640	regulatory region 580640	878 bp proximal
Rr580641	regulatory region 580641	1631 bp proximal
Tssr30454	transcription start site region 30454	993 bp upstream
Tssr30455	transcription start site region 30455	1007 bp upstream
Tssr30456	transcription start site region 30456	1038 bp upstream
Tssr34391	transcription start site region 34391	884 bp downstream