rs33061697 SNP Detail

Summary

• ID
  rs33061697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86985162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGGCAC TTCCACAAAA
  GCCTGATGAC CTGAGTTCAA TCCCCATCAC CCACTTTTTT TTTTTAAAGA GAGGAAGGAG
  AGAACTGACT GCAGTTGCCC TCTGACTTCC ATGTGCTCCC CAAGGCGAGC AACACACCAC
  ATCATACACA TCACAATAAT ACATTTTTAA AGGATGACTT TGAGCTACAC CTGCCAACTG
  Y
  CCCTGATGCT GCCACCACTA CAACTAGACA GAGGAGGTCT TGCCTGGTGG GTAAGTGAAC
  AGTCAAGGGT GCCCACGGAG AGCCACTTCT GCCAGGCCCA CTCCTGAACT CCTAGGTCCT
  CACGGGCTCA GACCCTCTTG CCTCCGCTGA AGCTGCAGAA GGGACTCAGC TGTGCACTGT
  CTCCTCCCCC AGGGACCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49438913	NES12806981	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33061697					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438913	NES12806981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86985162 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr36779	regulatory region 36779	496 bp distal
Rr36780	regulatory region 36780	within coordinates
Rr36781	regulatory region 36781	1250 bp proximal
Rr371660	regulatory region 371660	705 bp upstream