rs33061699 SNP Detail

Summary

• ID
  rs33061699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86984677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTGGTC AGTTAAACCT
  TAGGATAAGA TAATCTCTTT GAACCTGCTC TGCCTTTTTG TGAGCTTTTA TGATTATCAA
  GGGTTTCTTT CTCTAGTATA TAAAGCCATC TTAGGGGGTA AGATCTATTT AAGTCATTTA
  TTTTACTTAA AACGGTCATT TTACTCAAGC AGGTTCATGA ACTTCACTGT GTTCCACAGT
  R
  TTCCTAAATT GTACAGTTCT GGAAAGCAGT TAGCCAAATA CCAAGAAAAT GAATGCAGAA
  TAGAGTGAGG AACAAAGGCG GCCCTTCAGC ATATTTTACC TTAATAGATT TTCCAGCTAA
  TAAGACTGCT GCTGGAGGGA GAGTGTCCTC CCGGTGCTCC TGACACCAAG TCACAGAGAA
  ATTACCGAAT GCGGCACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49438915	NES12806999	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33061699					SNP	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438915	NES12806999	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86984677 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr36779	regulatory region 36779	11 bp distal
Rr36780	regulatory region 36780	63 bp proximal
Rr36781	regulatory region 36781	1735 bp proximal
Rr371660	regulatory region 371660	1190 bp upstream