rs33061720 SNP Detail

Summary

• ID
  rs33061720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:144131450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAGTCA CGCTGTGGTA
  TAAATTTTTA TTAAATAGAA CATCTGGGGA GTGTAGACAG TTTGGTGCCA CTGATGGAGT
  GAACTGTTGT TGGTGCTCAG CAGTGAGAGG GTACGTCACC CTGGTGACAC CCTGGCGGTG
  CTCAGCTGAG AAACATGTGC AGAAGAACAC AGAGGTCACG GCCGCTGGGG ACAGACCCAG
  R
  TGCCCCCTTG GGACCCTGAC ACTGACATGA GGGCAACCCC TTGATGCCTC TCTGCACGTG
  GGTGTGTCTG CTCTCACCTC TGGAAATTCG GAGGACATGG AGCCACTCAT GTCCTTGGGA
  TGGGACCCCA GAGTAGTGTC CTCTTAGCTT CTGGGGATAC CCCTCCTGTC CAGGACATCA
  AACGGGGAGG ATTCTGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45732692	mCV22338199	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss144608199	ENSMUSSNP5205971	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321709372	CHEV_5_144955501	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33061720					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144131450 () rs orientation: forward

Symbol	Name	Function Class
Bhlha15	basic helix-loop-helix family, member a15	191 bp downstream
Rr624360	regulatory region 624360	within coordinates
Tecpr1	tectonin beta-propeller repeat containing 1	mRNA-UTR