rs33061990 SNP Detail

Summary

• ID
  rs33061990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52139342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGAGGGC TTCCCCCCAC
  GCCGCCTTCG TCCTCTAAAG CGGGCCATGC CCACGACCTG GACTAAAGTG TCTAACGAGG
  GACTCCTGCC GGGCAGGTGT GCGGGAGAGG CAAAGACGCC AAGTAAGTCC GCATCCCGGC
  CATGACCCTC ACTTCACCAG CCCAGTCCTC CCGAATGTCT GAGCGCGCTC GAGAGAAGGG
  Y
  CAGCAAGACC CCGGCACGCG AGGGGCGCAG AGTCGCCCCA GCCGGGGCCA CTGAGAAGTT
  TGGATCGGTT CCGCATCCGC AGAAAACGGA GGCGAGCCGG GCAAGAGACC CAGAGCGGGA
  GCAGCACTGG CAGGGAGCAA AGAAGCGGGA CTCACTCAGG CGTGGAACCG GGACAGCGCG
  GGCCAGCGGT GCGGGCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39489826	mCV22941006	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33061990					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52139342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	within coordinates
Gm6934	predicted gene 6934	505 bp upstream
Rr370288	regulatory region 370288	891 bp upstream
Rr528751	regulatory region 528751	within coordinates
Rr528752	regulatory region 528752	348 bp proximal
Rr528753	regulatory region 528753	647 bp proximal
Rr528754	regulatory region 528754	966 bp proximal
Satb1	special AT-rich sequence binding protein 1	within coordinates
Tssr145166	transcription start site region 145166	443 bp upstream
Tssr145167	transcription start site region 145167	464 bp upstream
Tssr145168	transcription start site region 145168	501 bp upstream
Tssr145169	transcription start site region 145169	693 bp upstream
Tssr145170	transcription start site region 145170	706 bp upstream
Tssr145171	transcription start site region 145171	928 bp upstream
Tssr148679	transcription start site region 148679	419 bp upstream
Tssr148680	transcription start site region 148680	293 bp downstream
Tssr148681	transcription start site region 148681	321 bp downstream
Tssr148682	transcription start site region 148682	352 bp downstream
Tssr148683	transcription start site region 148683	378 bp downstream
Tssr148684	transcription start site region 148684	761 bp downstream
Tssr148685	transcription start site region 148685	799 bp downstream
Tssr148686	transcription start site region 148686	891 bp downstream
Tssr148687	transcription start site region 148687	936 bp downstream
Tssr148688	transcription start site region 148688	964 bp downstream