rs33062160 SNP Detail

Summary

• ID
  rs33062160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATTTG AGAGCACCAA
  AGTTGAGTAG CATCTGGCTG CAGACTTCCT GGTCTATCCT CTTGTTTAAC GGAAGAGGAA
  GTTGGAGCCT GGAGGGACAC AGCCAGTGAG GGGCAAGGCT CCAGTTAGTT AAGTGACTTT
  CCTTAGAGTA CCCTAAGCTA AGCCTCACTC TTAGCAAGTA AATGAATGCC TCTTTTATGG
  K
  TTTGGTCCCT GGAATTAAGA CTGTCCCATC ATCACATGAG TGAGGGGACT GGGTATGACC
  CTAGCAGCCA GAGTCCTCCT CAATAGCAAG AGAAGTTCAG AGGCGGAACG CTGCCTGCTT
  CTATTTTCCA GTTACTCGCC ATCTTGGTTA AGGAGATCAA CCTGTAGGAG TATTTCCCAA
  GTCCACTCAC CAAACAAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766962	NES10733064	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33062160					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766962	NES10733064	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390937 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	314 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1444 bp proximal
Gm65215	predicted gene, 65215	within coordinates
Gm65218	predicted gene, 65218	800 bp downstream
Rr580638	regulatory region 580638	515 bp distal
Rr580639	regulatory region 580639	within coordinates
Rr580640	regulatory region 580640	579 bp proximal
Rr580641	regulatory region 580641	1332 bp proximal
Tssr30454	transcription start site region 30454	694 bp upstream
Tssr30455	transcription start site region 30455	708 bp upstream
Tssr30456	transcription start site region 30456	739 bp upstream
Tssr34391	transcription start site region 34391	585 bp downstream