rs33062597 SNP Detail

Summary

• ID
  rs33062597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86984377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGCATA CCATGAAAAT
  AAATTTTAAA GAATTAACTG TAACCAGGTC TGTTAGCACA TCCCTGTAAT CCCAGCTGCT
  CAAAGGGCTG AGGCAGTAGG AGAGCAAGTT CAAGTCTGGC TTTGGCTACA GAGCCTGTGA
  GTTAAAGCCC AGGCAACTTA GCAAGACCCA GTCTCAAAAC AGAAATTATA GGCAGGAGGT
  R
  CCTGGAGCCA TAGCTGAGGA TGGGTACTGG CCAGGCCTGT GTGAGTTCCC CAAGTTCTAT
  TCTCATTCCT GAAAAAAAAA AAACAACAAA AAAAAAAACA TAAGTGGTCA GTTAAACCTT
  AGGATAAGAT AATCTCTTTG AACCTGCTCT GCCTTTTTGT GAGCTTTTAT GATTATCAAG
  GGTTTCTTTC TCTAGTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49438923	NES12806995	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33062597					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49438923	NES12806995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86984377 () rs orientation: forward

Symbol	Name	Function Class
Gm28375	predicted gene 28375	within coordinates
Rr17955	regulatory region 17955	1777 bp distal
Rr36779	regulatory region 36779	247 bp proximal
Rr36780	regulatory region 36780	363 bp proximal
Rr371660	regulatory region 371660	1490 bp upstream