rs33063212 SNP Detail

Summary

• ID
  rs33063212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34152964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TAGCCTGACC CTCTCCTTCT
  Y
  AGTCCCCTTG TGCTGACAAC CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45733097	mCV25133972	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33063212					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34152964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	364 bp upstream
Rr609648	regulatory region 609648	767 bp distal
Rr609649	regulatory region 609649	within coordinates
Tssr1458	transcription start site region 1458	1163 bp upstream
Tssr45846	transcription start site region 45846	389 bp upstream
Tssr45847	transcription start site region 45847	428 bp upstream
Tssr45848	transcription start site region 45848	474 bp upstream
Tssr45849	transcription start site region 45849	499 bp upstream
Tssr45850	transcription start site region 45850	790 bp upstream
Tssr45851	transcription start site region 45851	965 bp upstream
Tssr45852	transcription start site region 45852	989 bp upstream
Tssr45853	transcription start site region 45853	1019 bp upstream
Tssr45854	transcription start site region 45854	1078 bp upstream
Tssr45855	transcription start site region 45855	1111 bp upstream
Tssr45856	transcription start site region 45856	1128 bp upstream
Tssr45857	transcription start site region 45857	1150 bp upstream
Tssr50625	transcription start site region 50625	916 bp downstream
Tssr50626	transcription start site region 50626	1961 bp downstream