rs33063421 SNP Detail

Summary

• ID
  rs33063421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192098581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGACTC TGTAGATCCT
  GCTGTCTGGG AAAAGCCCTT CCCTGTCCCC ATCCCTGCAG GGCTGGGCAG GGAACTGCCT
  GGGACACTGC ATAGTCAGCT TACATTCCTC CCTAGTCACT GCTTACCTCC CTGAAGGGCT
  TTGGGACCTA TCTCAGTTCC TGATCCAGAG ACAAGACTGT GGCATCTCAT GGCAGAGCCC
  R
  GCCTGAGGAA GGAGGCAGTG GCTGCTGGGG AGAGAAGCAG CACTGGAGCC CCCGCTTCCC
  TCTTCTCTTG GTAACTCGCT AGCGACTTTG AGCACATCAC GTGTCTCTCT TGCTCCAGTG
  CCCACATTTG GAACACATTG AAGTAAGATG ACCTTTAAGA CCACGTGGCC TCTGTGGCCT
  TTGGGCTAGC TATGACCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767072	NES10656993	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33063421					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767072	NES10656993	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192098581 () rs orientation: forward

Symbol	Name	Function Class
D1Mit510	DNA Segment, Chr 1 Massachusetts Institute of Technology 510	1619 bp proximal
Kcnh1	potassium voltage-gated channel, subfamily H (eag-related), member 1	within coordinates
Rr426339	regulatory region 426339	within coordinates