rs33063865 SNP Detail

Summary

• ID
  rs33063865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94392361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCGAGG AGGTAGGTTC
  TATAACTTTG GCTTTAGCCC CTTTTCTCCT ACCCCCCAGG CCCAGGGCTT GATGGAGCTG
  AAGGACAGCC TTTCTTGAGG AAGGAAGTCT GGTAATGCTA AAGAATTATC TGCTGAGGTT
  GGGTTAAGGA GTGGGCGGTA GGAGTGGTGA AGGTAGGAGA TCTGGCCCAT TTGCAGAGAT
  Y
  ACAAAGCGGA GGCCAAGTAG AGTTCACGTC CTTCAGAGCT GAGTTCTGCA TGTTACTGAA
  CTCTAATTCC CAACTATCAG TTCTTCACAC CCTCGAGCCA CAGTTTCCCA GGATGGGGGA
  GGTGGTGTCA GGAGCAACAG GGATGCGTGA AGGTGGAGGG CTGGGAAAGT GGTCAGGAGG
  CCCCGTACAT TCCTCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766977	NES10733077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33063865					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766977	NES10733077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94392361 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	688 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	20 bp proximal
Gm65215	predicted gene, 65215	835 bp upstream
Gm65218	predicted gene, 65218	82 bp upstream
Rr580638	regulatory region 580638	1939 bp distal
Rr580639	regulatory region 580639	846 bp distal
Rr580640	regulatory region 580640	345 bp distal
Rr580641	regulatory region 580641	within coordinates
Tssr30454	transcription start site region 30454	719 bp downstream
Tssr30455	transcription start site region 30455	703 bp downstream
Tssr30456	transcription start site region 30456	646 bp downstream
Tssr30457	transcription start site region 30457	1250 bp upstream
Tssr30458	transcription start site region 30458	1278 bp upstream
Tssr34391	transcription start site region 34391	826 bp upstream